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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27914343_27914966_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27914343 - 27914966
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTCTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GTCATTTGAAGC
Flanking Amino Acid:
MVTHAKKHPSLIPLFLIIGS
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.3
65.8
40.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
88.6
0.87
0.8
84.2
30.7
Minor 5ss
32.5
-2
2.6
33.8
33.9
Minor BPS
45.5
-0.3
1.7
51.8
39.5

Associated Gene:

Gene:
NDUFA4
Ensembl Gene ID:
ENSAPLG00000016250
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016951
27911770 - 27915011
3242