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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27956999_27965153_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27956999 - 27965153
Intron Length:
8155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
TTTGTGTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCCTTATGT
Flanking Amino Acid:
VTTVE*QCMKVAMVLMERVI
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
36.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.7
0.56
1
70.3
40.4
Minor 5ss
31.3
-2.1
3
39.2
46
Minor BPS
65.3
0.56
1.9
83.49
43.8

Associated Gene:

Gene:
PHF14
Ensembl Gene ID:
ENSAPLG00000016105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020410
27941260 - 28070765
129506
ENSAPLT00000019007
27941260 - 28104684
163425
ENSAPLT00000016848
27941260 - 28049022
107763
ENSAPLT00000036715
27941260 - 28104684
163425
ENSAPLT00000024740
27941260 - 28104684
163425