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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27965314_27970815_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27965314 - 27970815
Intron Length:
5502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTAACCTAATT
Flanking Amino Acid:
MGSSRRQMRAGGSILFVPSM
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.6
0.51
1
69.7
41.5
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
49.5
0.04
1.9
69.09
41.6

Associated Gene:

Gene:
PHF14
Ensembl Gene ID:
ENSAPLG00000016105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019007
27941260 - 28104684
163425
ENSAPLT00000016848
27941260 - 28049022
107763
ENSAPLT00000036715
27941260 - 28104684
163425
ENSAPLT00000024740
27941260 - 28104684
163425
ENSAPLT00000020410
27941260 - 28070765
129506