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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27970928_27973205_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27970928 - 27973205
Intron Length:
2278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTATAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTCTTATAAAG
Flanking Amino Acid:
QK*IIQSMVPRSAVFAKILV
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.2
0.52
1.1
74.9
32.8
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
50.3
-0.1
1.7
62.72
38.9

Associated Gene:

Gene:
PHF14
Ensembl Gene ID:
ENSAPLG00000016105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016848
27941260 - 28049022
107763
ENSAPLT00000036715
27941260 - 28104684
163425
ENSAPLT00000024740
27941260 - 28104684
163425
ENSAPLT00000020410
27941260 - 28070765
129506
ENSAPLT00000019007
27941260 - 28104684
163425