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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27973344_27978485_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27973344 - 27978485
Intron Length:
5142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATGTTCTTAATT
Flanking Amino Acid:
KAFSQKQQQKRLESMPDYSS
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81.4
0.71
0.8
77.4
29.8
Minor 5ss
38
-1.4
3.1
50.1
46.4
Minor BPS
78.9
0.99
1.1
85.69
34.7

Associated Gene:

Gene:
PHF14
Ensembl Gene ID:
ENSAPLG00000016105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019007
27941260 - 28104684
163425