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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27975172_27978485_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27975172 - 27978485
Intron Length:
3314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATAT
5'SS Class:
major
3'SS Sequence:
CTCTTTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATGTTCTTAATT
Flanking Amino Acid:
KEKNSFRQKLRLESMPDYSS
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
70.7
35.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81.4
0.71
0.8
77.4
29.8
Minor 5ss
38.6
-1.3
3.3
56.3
47.8
Minor BPS
78.9
0.99
1.1
85.69
34.7

Associated Gene:

Gene:
PHF14
Ensembl Gene ID:
ENSAPLG00000016105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016848
27941260 - 28049022
107763
ENSAPLT00000036715
27941260 - 28104684
163425
ENSAPLT00000024740
27941260 - 28104684
163425
ENSAPLT00000020410
27941260 - 28070765
129506