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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27980762_27982315_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
27980762 - 27982315
Intron Length:
1554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTTT
5'SS Class:
major
3'SS Sequence:
TCAAATCCAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ATTTGTTCAAAT
Flanking Amino Acid:
FGLCWVESLDRN*TYLQFYV
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1.2
79.9
36
Major BPS
77.3
0.68
1
81.5
27
Major PPT
57.6
0.17
1
51.8
37.5
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
51.6
0.13
2
75.88
40.7

Associated Gene:

Gene:
PHF14
Ensembl Gene ID:
ENSAPLG00000016105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016848
27941260 - 28049022
107763
ENSAPLT00000036715
27941260 - 28104684
163425
ENSAPLT00000024740
27941260 - 28104684
163425
ENSAPLT00000020410
27941260 - 28070765
129506
ENSAPLT00000019007
27941260 - 28104684
163425