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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_27993677_28008250_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27993677 - 28008250
Intron Length:
14574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATGAT
5'SS Class:
major
3'SS Sequence:
TATTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTATTGAATT
Flanking Amino Acid:
QNRRKFQSETRELEDENEAL
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.1
34.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.2
0.88
0.7
81.5
35.8
Minor 5ss
34.2
-1.8
3.4
49.3
47
Minor BPS
60.2
0.4
1.6
77.61
39.1

Associated Gene:

Gene:
PHF14
Ensembl Gene ID:
ENSAPLG00000016105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024740
27941260 - 28104684
163425
ENSAPLT00000020410
27941260 - 28070765
129506
ENSAPLT00000019007
27941260 - 28104684
163425
ENSAPLT00000016848
27941260 - 28049022
107763
ENSAPLT00000036715
27941260 - 28104684
163425