About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28008600_28047882_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28008600 - 28047882
Intron Length:
39283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATACATTTATTT
Flanking Amino Acid:
KGLETMKI*SGVMNVGSATI
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
48.5
-0
1.7
65.74
38.9

Associated Gene:

Gene:
PHF14
Ensembl Gene ID:
ENSAPLG00000016105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024740
27941260 - 28104684
163425
ENSAPLT00000020410
27941260 - 28070765
129506
ENSAPLT00000019007
27941260 - 28104684
163425
ENSAPLT00000016848
27941260 - 28049022
107763
ENSAPLT00000036715
27941260 - 28104684
163425