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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2803659_2807045_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2803659 - 2807045
Intron Length:
3387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGGCAT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CATTCTATAACA
Flanking Amino Acid:
NNKVKELERELQTAVEKIHS
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
68.4
38.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
28.7
-2.4
3.3
38.6
40.8
Minor BPS
65.3
0.48
1.6
73.39
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013331
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035103
2796463 - 2827744
31282
ENSAPLT00000025434
2796463 - 2828297
31835
ENSAPLT00000013886
2800224 - 2825482
25259
ENSAPLT00000038150
2798998 - 2825482
26485