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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28048001_28048950_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28048001 - 28048950
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGACTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ATTTTTTTGACT
Flanking Amino Acid:
FVRNVTLHLPNVPFRLGRYG
Intron Amino Acid Position:
878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
69.4
0.44
1
65.5
40.8
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
77.4
0.94
1
88.54
29.3

Associated Gene:

Gene:
PHF14
Ensembl Gene ID:
ENSAPLG00000016105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016848
27941260 - 28049022
107763