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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28069168_28070682_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28069168 - 28070682
Intron Length:
1515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACCA
5'SS Class:
major
3'SS Sequence:
GTTGGATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGAAA
U12 Branch Point Sequence:
TGTGGTTGGATT
Flanking Amino Acid:
WYRWHRNIQKREP*EGSTST
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.3
40.7
Major BPS
53.7
0.09
1.4
64.3
39.6
Major PPT
74
0.54
1
66.1
44.4
Minor 5ss
30.9
-2.2
3.3
39.8
45.7
Minor BPS
45
-0.3
1.9
63.65
41.5

Associated Gene:

Gene:
PHF14
Ensembl Gene ID:
ENSAPLG00000016105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020410
27941260 - 28070765
129506