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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2807531_2809001_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2807531 - 2809001
Intron Length:
1471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTTC
5'SS Class:
major
3'SS Sequence:
CCTTTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CCTTTCTTCACA
Flanking Amino Acid:
AKQELKMMQKLLANEVGEDV
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
66.9
39.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
84.1
0.77
0.7
79
26.6
Minor 5ss
40.3
-1.1
3.5
59
45.8
Minor BPS
62.4
0.38
1.8
70.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013331
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035103
2796463 - 2827744
31282
ENSAPLT00000025434
2796463 - 2828297
31835
ENSAPLT00000013886
2800224 - 2825482
25259
ENSAPLT00000038150
2798998 - 2825482
26485