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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2812532_2813552_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2812532 - 2813552
Intron Length:
1021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACTGCCC
5'SS Class:
weak_major
3'SS Sequence:
TCTATTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
TCTATTTTATCA
Flanking Amino Acid:
HDDELIDALLSQLKQMQEIL
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.1
47.1
41.3
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
81.6
0.71
0.9
81.5
34.7
Minor 5ss
31.2
-2.2
3.4
40
40.8
Minor BPS
56.9
0.21
1.6
66.97
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013331
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035103
2796463 - 2827744
31282
ENSAPLT00000025434
2796463 - 2828297
31835
ENSAPLT00000013886
2800224 - 2825482
25259
ENSAPLT00000038150
2798998 - 2825482
26485