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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2813760_2814817_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2813760 - 2814817
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCGGA
5'SS Class:
major
3'SS Sequence:
CCACCATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CCACCATTAACA
Flanking Amino Acid:
EEEIGQLTLQKKSAQQGDNP
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
56.1
43.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
64
0.32
1
57.8
36
Minor 5ss
34.4
-1.8
3.6
47.2
48.2
Minor BPS
57.5
0.23
1.7
63.03
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013331
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038150
2798998 - 2825482
26485
ENSAPLT00000035103
2796463 - 2827744
31282
ENSAPLT00000025434
2796463 - 2828297
31835
ENSAPLT00000013886
2800224 - 2825482
25259