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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2814955_2817146_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2814955 - 2817146
Intron Length:
2192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
CAGTGTTTAACA
Flanking Amino Acid:
GDQAGRTESARTVSKMGHML
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.1
39.5
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
82.2
0.72
0.7
77.5
24.4
Minor 5ss
33.3
-1.9
2.9
41.4
44.7
Minor BPS
57.4
0.23
1.8
63.74
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013331
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035103
2796463 - 2827744
31282
ENSAPLT00000025434
2796463 - 2828297
31835
ENSAPLT00000013886
2800224 - 2825482
25259
ENSAPLT00000038150
2798998 - 2825482
26485