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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2817231_2818036_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2817231 - 2818036
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTGAA
U12 Branch Point Sequence:
AAATGGGAAACA
Flanking Amino Acid:
PLLSNNIPPGRLAGTDSLDF
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.3
29.4
Major BPS
59.5
0.24
1.3
51.3
44.2
Major PPT
72.5
0.51
0.9
69.5
36.8
Minor 5ss
38.2
-1.3
3
51
45.5
Minor BPS
34.2
-1.2
2.7
47.24
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013331
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025434
2796463 - 2828297
31835
ENSAPLT00000013886
2800224 - 2825482
25259
ENSAPLT00000038150
2798998 - 2825482
26485
ENSAPLT00000035103
2796463 - 2827744
31282