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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2818166_2820555_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2818166 - 2820555
Intron Length:
2390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGCCT
5'SS Class:
major
3'SS Sequence:
TTTTGCATATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TAAGCTTGAATC
Flanking Amino Acid:
LLELVTVLQKRVEESSDKVL
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
59.8
44.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
77
0.61
1
75.7
38
Minor 5ss
32.1
-2
3.6
48.5
47.2
Minor BPS
54.2
0.11
1.5
61.13
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013331
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038150
2798998 - 2825482
26485
ENSAPLT00000035103
2796463 - 2827744
31282
ENSAPLT00000025434
2796463 - 2828297
31835
ENSAPLT00000013886
2800224 - 2825482
25259