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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28206976_28219428_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28206976 - 28219428
Intron Length:
12453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATTTAGA
5'SS Class:
major
3'SS Sequence:
TCCATTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTCCATTCATG
Flanking Amino Acid:
LVETSRCNSHGYIEEACIIP
Intron Amino Acid Position:
1040

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
63.8
41.9
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
74.8
0.56
0.9
69.4
35.7
Minor 5ss
41.7
-0.9
2.5
51.3
45.3
Minor BPS
50.9
-0.1
2.1
66.07
41.8

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223