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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28219693_28221884_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28219693 - 28221884
Intron Length:
2192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACTTTCTAAAAT
Flanking Amino Acid:
GVRTRKRTLVGKSKKRDKCK
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
76.9
31.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
91.3
0.93
0.6
84.4
30.6
Minor 5ss
34.2
-1.8
3.5
44.1
44.7
Minor BPS
58.8
0.35
1.8
74.89
42

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223