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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28234261_28236104_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28234261 - 28236104
Intron Length:
1844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTTT
5'SS Class:
major
3'SS Sequence:
CTCCTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTCTACTTGATT
Flanking Amino Acid:
CEASPVCYSYRWKTHKWRRC
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
72.3
39.7
Major BPS
79.2
0.72
1
75
40
Major PPT
80.1
0.68
0.8
77.2
30
Minor 5ss
41.3
-1
3.7
64.1
47.4
Minor BPS
70.1
0.71
1.5
83.95
37.2

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223