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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28236238_28239881_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28236238 - 28239881
Intron Length:
3644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTATCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTTTTTCTATCC
Flanking Amino Acid:
WTLCPSSCQDGDVIVKKQSR
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
78.7
30.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
82.5
0.73
0.8
76.8
31.5
Minor 5ss
44
-0.7
2.8
55.4
44
Minor BPS
49.9
-0
1.9
67.17
38.5

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223