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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28239998_28243123_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28239998 - 28243123
Intron Length:
3126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAGATC
5'SS Class:
major
3'SS Sequence:
TTCACTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTCACTT
Flanking Amino Acid:
RVNVGQVGPKKCPENLRPET
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
73
36.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.2
0.81
0.7
84.2
30.6
Minor 5ss
37.9
-1.4
3.4
51.7
39.6
Minor BPS
56.7
0.29
1.8
79.05
38

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223