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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28243359_28251442_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28243359 - 28251442
Intron Length:
8084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTCCATGAACT
Flanking Amino Acid:
ARSILAYAGEGGIQCPNSSA
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.3
38
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.9
0.78
0.9
77
41.9
Minor 5ss
35.6
-1.6
3.5
47.4
48.2
Minor BPS
62.9
0.48
1.7
82.91
37

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223