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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2824782_2825322_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2824782 - 2825322
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
CTCACATGAAAG
Flanking Amino Acid:
LESQVEELSTRLVIQLDENE
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.6
32.9
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
78.4
0.64
0.8
74
31.1
Minor 5ss
41.8
-0.9
3
59.5
44.9
Minor BPS
44.2
-0.5
1.9
47.7
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013331
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035103
2796463 - 2827744
31282
ENSAPLT00000025434
2796463 - 2828297
31835
ENSAPLT00000013886
2800224 - 2825482
25259
ENSAPLT00000038150
2798998 - 2825482
26485