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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28251635_28278226_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28251635 - 28278226
Intron Length:
26592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
AAATGATAGACT
Flanking Amino Acid:
VPVVVCVNGDGEEVDRQLCR
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.6
37.4
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
90.5
0.91
0.6
84.4
30.5
Minor 5ss
38.4
-1.3
3.1
47.7
42.5
Minor BPS
42.7
-0.4
2.2
60.18
43

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223