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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28278431_28281896_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28278431 - 28281896
Intron Length:
3466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACGGACATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TATTCCACCACT
Flanking Amino Acid:
ESCDDPQAKKGFKLRKRRIT
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.9
35.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
61
0.25
1
51.6
41.8
Minor 5ss
40.7
-1
2.5
42.1
44.8
Minor BPS
50.1
0.08
2.2
78.88
42.7

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223