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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28286228_28288008_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28286228 - 28288008
Intron Length:
1781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTGCATACTC
Flanking Amino Acid:
SYLNTLKEKEEIQSQSKSKA
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
77
0.61
0.9
73.3
35.8
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
48.9
-0.1
2.2
70.88
41

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223