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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28290073_28304522_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28290073 - 28304522
Intron Length:
14450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTACTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GCTCTCTTACTA
Flanking Amino Acid:
THRNGKTAALSFCKQEKLPI
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
77.3
37.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
82.8
0.74
0.8
77
30.2
Minor 5ss
42.1
-0.9
2.9
59.1
45
Minor BPS
53.1
0.09
1.6
60.67
39.9

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223