Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2829486_2833576_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2829486 - 2833576

Intron Length:

4091

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TGG|GCAGCCCAT

5'SS Class:

weak_major

3'SS Sequence:

TCTCTGCTCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAC

U12 Branch Point Sequence:

AATTCACCAAGC

Flanking Amino Acid:

MVTPPLPWHRAVVYMLYG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.4

0.18

1.4

49.6

46.6

Major BPS

73.5

0.58

0.9

75.4

28.3

Major PPT

78.1

0.63

0.8

72.5

32.2

Minor 5ss

32.9

-1.9

4.3

46.6

48.8

Minor BPS

42.4

-0.6

2.2

56.82

40.9

Associated Gene:

Gene:

HHATL

Ensembl Gene ID:

ENSAPLG00000013163

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018442

2829462 - 2838815

9354