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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28305355_28378831_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28305355 - 28378831
Intron Length:
73477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
AGGTGTGCAACG
Flanking Amino Acid:
QTSSVYLWKTGPWGRCMGDE
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
38.2
-1
2.3
42.17
43.1

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223