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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2832673_2833428_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2832673 - 2833428
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTTTAATTT
5'SS Class:
weak_major
3'SS Sequence:
CGGGGATGTAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCATGAC
U12 Branch Point Sequence:
TGCTCCATGACG
Flanking Amino Acid:
FEASRGNHRHGPEGALRSLG
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.2
59.6
39.9
Major BPS
49.9
-0
1.2
43
37.8
Major PPT
47.4
-0.1
1.2
40.3
42.3
Minor 5ss
45.2
-0.5
2.9
57.6
46.8
Minor BPS
59.3
0.15
1.8
64.67
43

Associated Gene:

Gene:
HHATL
Ensembl Gene ID:
ENSAPLG00000013163
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013722
2832515 - 2842752
10238