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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2834689_2837097_F

Intron Information:

Intron Rank:
4
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
2834689 - 2837097
Intron Length:
2409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTCTCTTTG
5'SS Class:
weak_minor
3'SS Sequence:
CAAAGACGACGAG|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
CAAAGAC
U12 Branch Point Sequence:
TGAGGCGCAAAG
Flanking Amino Acid:
QVSVPRDLSLMRNIRVHALL
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
46.3
-0.2
1.4
48
43
Major BPS
45
-0.3
1
36.4
29.3
Major PPT
39
-0.6
1.6
25.7
36
Minor 5ss
62
0.41
2.1
72.6
38.3
Minor BPS
34.4
-1.3
2.4
38.39
44

Associated Gene:

Gene:
HHATL
Ensembl Gene ID:
ENSAPLG00000013163
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018442
2829462 - 2838815
9354
ENSAPLT00000013722
2832515 - 2842752
10238