About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2837234_2838666_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2837234 - 2838666
Intron Length:
1433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTACTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCCTCTTCACCT
Flanking Amino Acid:
FVNRLSDWSLAGLAYSNLVY
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
66.6
39.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.8
0.81
0.8
78.2
35
Minor 5ss
27.1
-2.6
3
26.2
36.9
Minor BPS
53.3
0.18
1.9
71.32
46.1

Associated Gene:

Gene:
HHATL
Ensembl Gene ID:
ENSAPLG00000013163
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013722
2832515 - 2842752
10238