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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28379350_28416873_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
28379350 - 28416873
Intron Length:
37524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCGCTCTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTCTCCTCATCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
78
0.63
0.8
69.3
36.9
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
62.1
0.36
1.9
74.6
42.2

Associated Gene:

Gene:
THSD7A
Ensembl Gene ID:
ENSAPLG00000005027
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005201
28206764 - 28416986
210223