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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2839204_2839943_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2839204 - 2839943
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGGCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTACAA
U12 Branch Point Sequence:
TTGACTACAAGG
Flanking Amino Acid:
FDRGINDWLCKYVYDHIGEN
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
52.2
0.06
1
61
34.9
Major PPT
62.7
0.29
1
60.3
41.5
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
42
-0.7
2
49.09
44.6

Associated Gene:

Gene:
HHATL
Ensembl Gene ID:
ENSAPLG00000013163
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013722
2832515 - 2842752
10238