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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28508886_28510174_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28508886 - 28510174
Intron Length:
1289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTATCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
YSDQRLRPRRTKLYVTASVI
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.3
75
38.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.4
0.8
0.7
78.8
34.8
Minor 5ss
40.9
-1
2.8
48.4
41.2
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
TMEM106B
Ensembl Gene ID:
ENSAPLG00000005362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017241
28506483 - 28517387
10905
ENSAPLT00000005563
28506483 - 28517072
10590
ENSAPLT00000033724
28506483 - 28552056
45574