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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28510335_28511128_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28510335 - 28511128
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TAATTCTTAAAG
Flanking Amino Acid:
GRRIIYLNITNTLNITNNNY
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.8
44.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
84.3
0.77
0.7
77.9
31
Minor 5ss
36.1
-1.6
3.2
49.4
46.3
Minor BPS
67
0.4
1.5
66.76
40.3

Associated Gene:

Gene:
TMEM106B
Ensembl Gene ID:
ENSAPLG00000005362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017241
28506483 - 28517387
10905
ENSAPLT00000005563
28506483 - 28517072
10590
ENSAPLT00000033724
28506483 - 28552056
45574