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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28511270_28511361_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28511270 - 28511361
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
TNIGPLDMKQIDYMVPTVIQ
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
TMEM106B
Ensembl Gene ID:
ENSAPLG00000005362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017241
28506483 - 28517387
10905
ENSAPLT00000005563
28506483 - 28517072
10590
ENSAPLT00000033724
28506483 - 28552056
45574