About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28511412_28514963_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28511412 - 28514963
Intron Length:
3552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATCTAATAGCT
Flanking Amino Acid:
TVIQDEMSYMFDFCTLASIK
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
76.2
32.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
43.8
-0.3
2
63.62
39.7

Associated Gene:

Gene:
TMEM106B
Ensembl Gene ID:
ENSAPLG00000005362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017241
28506483 - 28517387
10905
ENSAPLT00000005563
28506483 - 28517072
10590
ENSAPLT00000033724
28506483 - 28552056
45574