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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28515018_28515804_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28515018 - 28515804
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
CCTTACAAAACA
Flanking Amino Acid:
IKVHNIVVMMQVTVTTSYFG
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
60.3
0.26
1
65.5
28
Major PPT
82.1
0.72
1
86.9
31.1
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
46.7
-0.2
2.1
60.89
44.9

Associated Gene:

Gene:
TMEM106B
Ensembl Gene ID:
ENSAPLG00000005362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033724
28506483 - 28552056
45574
ENSAPLT00000017241
28506483 - 28517387
10905
ENSAPLT00000005563
28506483 - 28517072
10590