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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28515865_28551998_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28515865 - 28551998
Intron Length:
36134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
HSEQISQERYQILSKQYIAR
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
59.1
40.1
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
40.3
-1.1
3.1
53.7
44.7
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
TMEM106B
Ensembl Gene ID:
ENSAPLG00000005362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033724
28506483 - 28552056
45574