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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28515923_28517330_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28515923 - 28517330
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACTTCAG
5'SS Class:
major
3'SS Sequence:
TTTTTTAAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAA
Flanking Amino Acid:
YQLGQSEYLNVLRFLCCLSP
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
54.8
43.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.7
0.53
1
71.9
37.1
Minor 5ss
35
-1.7
3.2
45.1
43.1
Minor BPS
72.4
0.7
1.2
78.49
31.1

Associated Gene:

Gene:
TMEM106B
Ensembl Gene ID:
ENSAPLG00000005362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017241
28506483 - 28517387
10905