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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28553458_28556784_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28553458 - 28556784
Intron Length:
3327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACGGGA
5'SS Class:
major
3'SS Sequence:
GTCTTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
TCTTTCTTACAG
Flanking Amino Acid:
KGYEGELCQHATCYPKCKNG
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.2
55.3
43.9
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
85.7
0.8
0.8
79.8
32.3
Minor 5ss
34.6
-1.8
3.6
46.6
48.8
Minor BPS
56.9
0.08
1.8
63.72
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006000
28553124 - 28561808
8685