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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28556881_28559064_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28556881 - 28559064
Intron Length:
2184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TGTTCCTGAAAT
Flanking Amino Acid:
PGYGGRYCHKVSCEGGCQNG
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
69.6
0.49
1
59.5
39
Major PPT
82.7
0.73
0.8
77.1
31.6
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
72.9
0.8
1.5
87.72
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006000
28553124 - 28561808
8685