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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2855875_2856004_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2855875 - 2856004
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTGAG
U12 Branch Point Sequence:
TCCTCTTTCTCT
Flanking Amino Acid:
VYVIGGKGSDKKCLKNMCVY
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
42.8
-0.4
1.6
34.8
43.8
Major PPT
79.9
0.67
0.7
72.9
32
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
42.5
-0.4
3.6
70.73
46.8

Associated Gene:

Gene:
KLHL40
Ensembl Gene ID:
ENSAPLG00000012893
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013420
2850008 - 2858604
8597