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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28567844_28569481_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28567844 - 28569481
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
TGLLCGKRIQVQRHHG*
Intron Amino Acid Position:
1754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.6
0.53
1
72.2
32.8
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
VWDE
Ensembl Gene ID:
ENSAPLG00000005813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046864
28567823 - 28610166
42344
ENSAPLT00000037502
28567823 - 28610166
42344
ENSAPLT00000006013
28567823 - 28610166
42344