Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28572726_28573953_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

28572726 - 28573953

Intron Length:

1228

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTGAA

5'SS Class:

major

3'SS Sequence:

GGATGGATGGCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CCTTTTCTACTT

Flanking Amino Acid:

YGFVGPRCDTLVCNRHCENG

Intron Amino Acid Position:

1559

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

1.3

77.6

32.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

50.9

0.02

1.2

43.5

46.3

Minor 5ss

33.4

-1.9

3.2

39.2

39.9

Minor BPS

46.4

-0.2

1.9

62.82

42.7

Associated Gene:

Gene:

VWDE

Ensembl Gene ID:

ENSAPLG00000005813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037502

28567823 - 28610166

42344

ENSAPLT00000006014

28568562 - 28610166

41605

ENSAPLT00000006013

28567823 - 28610166

42344

ENSAPLT00000046864

28567823 - 28610166

42344