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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28576240_28576768_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28576240 - 28576768
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGCAA
5'SS Class:
major
3'SS Sequence:
TGATTTTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTTGTTGATT
Flanking Amino Acid:
GYYGDGFTCRALCRPDCKNH
Intron Amino Acid Position:
1463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.3
39.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.8
0.51
1
68.3
42.1
Minor 5ss
36.2
-1.6
3.2
47.1
48.3
Minor BPS
56.4
0.28
2.1
77.73
39.7

Associated Gene:

Gene:
VWDE
Ensembl Gene ID:
ENSAPLG00000005813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046864
28567823 - 28610166
42344