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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28579126_28579718_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28579126 - 28579718
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAATGA
5'SS Class:
major
3'SS Sequence:
CTGTTGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCCTCATCT
Flanking Amino Acid:
NLHGDGKSCYETFEDISAER
Intron Amino Acid Position:
1218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
62.4
38.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
78.7
0.65
0.9
76.9
37.3
Minor 5ss
37.1
-1.5
3.2
47.5
48
Minor BPS
59
0.36
1.9
75.91
46.6

Associated Gene:

Gene:
VWDE
Ensembl Gene ID:
ENSAPLG00000005813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046864
28567823 - 28610166
42344
ENSAPLT00000037502
28567823 - 28610166
42344
ENSAPLT00000006014
28568562 - 28610166
41605
ENSAPLT00000006013
28567823 - 28610166
42344